I'm not sure what you mean by "channel" ... the word channel really has no bearing on the power supply board. It sounds like you have the transformer connected to the board properly. One filament lead from EACH board goes to one terminal on the SDS board, the other filament lead from each board goes to the other terminal. In other words, the boards EACH go across the 24 volt output of the SDS board. The filaments on the boards are in series, so they run on 24 volts DC which is NOT groudn referenced. It seems like you have them hooked up to the wrong spot. Can you send me some hi res pictures ?
... tom